| LA CROSSE COUNTY: Gills Coulee Creek WS | BL04-32000-05 | Complete | 2005 |
| DANE COUNTY LAND CONSERVATION DEPT: German Valley Creek Middle | 162-SP05-13000-07 | Complete | 2006 |
| LA CROSSE COUNTY: Gills Creek - Phase II | 168-BL04-32000-07 | Complete | 2006 |
| DODGE COUNTY: Walsh Hog Farm NOI | UR03-14000-E08A | Complete | 2007 |
| COLUMBIA COUNTY: Jerome Cigelski Farm NOI | UF15-11000-E08A | Complete | 2007 |
| COLUMBIA COUNTY: Park Lake 151 NOIs | UF15-11000-E08B | Complete | 2007 |
| DODGE COUNTY: Wondra Farm NOI | UR12-14000-E08B | Complete | 2007 |
| KEWAUNEE COUNTY: Ullmer Farm Manure Management | TK01-31000-E08A | Complete | 2007 |
| MARATHON COUNTY: UBE Manure Storage Abandonments | UW18-37000-E08A | Complete | 2007 |
| Total Maximum Daily Load (TMD) Projects | TMD | Active | 2009 |
| BROWN COUNTY: San-Ric Holsteins | LF01-05000-E09A | Complete | 2008 |
| DANE COUNTY LAND CONSERVATION DEPT: Vermont Creek | LW17-13000-E09 | Complete | 2008 |
| LA CROSSE COUNTY: Gills Creek - Phase III | BL04-32000-E09 | Complete | 2008 |
| OUTAGAMIE COUNTY: Vandeloo Farm | LF02-44000-E09A | Complete | 2008 |
| CITY OF HILLSBORO: School Street WQ Practices | LW24-62236-E09 | Complete | 2008 |
| LA CROSSE COUNTY: Gills Coulee Creek, Phase IV | BL04-32000-E10 | Complete | 2009 |
| WASHINGTON COUNTY: Ihlenfeld Waste Storage Reconstruction | UR13-66000-12A | Complete | 2012 |
| BUFFALO COUNTY: JK Barnyard Runoff System | BT06-06000-12B | Complete | 2012 |
| VILLAGE OF LAC LA BELLE: Sediment & Phosphorus Reduction | UR09-67146-12 | Complete | 2012 |
| CHIPPEWA COUNTY LAND CONSERVATION DEPT: Little Lake Wissota Stewardship | L/LC19-09000-12 | Complete | 2012 |
| OUTAGAMIE COUNTY: Dutchman Creek Phosphorus | L/LF02-44000-12C | Complete | 2012 |
| OUTAGAMIE COUNTY: Ashwaubenon Creek Sediment | L/LF02-44000-12D | Complete | 2012 |
| GREEN COUNTY: Legler School & Pioneer Valley Creeks | L/SP14-23000-12 | Complete | 2012 |
| COLUMBIA COUNTY: Huebner Manure Storage | UR06-11000-13A | Complete | 2013 |
| TREMPEALEAU COUNTY: North & Newcomb Valley Creek Stabilization | BT02-61000-13D | Complete | 2013 |
| OUTAGAMIE COUNTY: Hoelzel Dairy Manure Storage | LF03-44000-13C | Complete | 2013 |
| WASHINGTON COUNTY: Butzlaff Barnyard Runoff Management | UR13-66000-13 | Complete | 2013 |
| COLUMBIA COUNTY: Lazy Lake LS TMDL | L/UR06-11000-13B | Complete | 2013 |
| BUFFALO COUNTY: C Ellis Manure Management | BT06-06000-14 | Complete | 2013 |
| BROWN COUNTY: Strebel Dairy LLC Feed Leachate Project | LF01-05000-14 | Complete | 2014 |
| BARRON COUNTY: Gerald Mlejnek Barnyard Runoff System | LC10-03000-14 | Complete | 2014 |
| OUTAGAMIE COUNTY: Grosse Runoff Management | LF05-44000-14 | Complete | 2014 |
| BURNETT COUNTY LAND CONSERVATION DEPARTMENT: Ringa Lea Farms Inc. Manure Storage | SC13-07000-14 | Complete | 2014 |
| POLK COUNTY LWRD: Wood Valley Manure Storage | SC04-48000-15 | Complete | 2015 |
| OUTAGAMIE COUNTY: Plum & Kankapot Creeks | L/LF03-44000-15 | Complete | 2015 |
| COLUMBIA COUNTY: Ebert, Greg and Timothy | UR06-11000-15 | Complete | 2015 |
| WASHINGTON COUNTY: Weninger Waste Storage Reconstruction | UR13-66000-15 | Complete | 2015 |
| POLK COUNTY LWRD: Neu-View Farms Manure Storage Facility | UR03-11000-N15 | Complete | 2018 |
| RICHLAND COUNTY: Little Willow Creek TMDL L-S | L/LW12-52000-14 | Complete | 2014 |
| OUTAGAMIE COUNTY: Steffens Family Farm | TMD45000Y16 | Complete | 2016 |
| WASHINGTON COUNTY: Moritz Clean Water Project | TMD67000Y16 | Complete | 2016 |
| CEDAR LAKE PROTECTION & REHABILITATION DIST: Cedar Lake TMDL Implementation | TMD03010LY16 | Complete | 2016 |
| CHIPPEWA COUNTY LAND CONSERVATION DEPT: Culver/Red Cedar TMDL Manure Storage Project | TMD09000Y17 | Active | 2017 |
| OUTAGAMIE COUNTY: Upper Duck Creek TMDL Implementation | TMD44000LY17 | Complete | 2017 |
| PIERCE COUNTY: Bergseng Family Dairy | TMD48000Y17 | Complete | 2017 |
| COLUMBIA COUNTY: DND Family Dairy LLC TRM 2017 | TMD11000Y17 | Complete | 2017 |
| OUTAGAMIE COUNTY: Apple Creek Watershed Large-scale TRM | TMD44000LY18 | Active | 2018 |
| MARINETTE COUNTY: Krzewina Manure Management | TMD38000Y18 | Complete | 2018 |
| WAUPACA COUNTY: Little Wolf River - Ron Rieckmann Manure Management | TMD68000AY18 | Complete | 2018 |
| WAUPACA COUNTY: Little Wolf River - Rodney Hass Manure Management | TMD68000Y18 | Complete | 2018 |
| POLK COUNTY LWRD: Neu-View Farms Manure Storage Facility | TMD49000Y18 | Complete | 2018 |
| POLK COUNTY LWRD: Nick Johnson Manure Storage Facility | TMD49000AY18 | Complete | 2018 |
| WASHINGTON COUNTY LCD: Hon-E-Kor Streambank Repair Project | TMD67000Y19 | Active | 2019 |
| COLUMBIA COUNTY: Weiland Dairy LLC | TMD11000Y19 | Active | 2019 |
| CHIPPEWA COUNTY LAND CONSERVATION DEPT: Lake Wissota Stewardship Project | TMD09000LY19 | Active | 2019 |
| OUTAGAMIE COUNTY: Plum and Kankapot | TMD44000LY19 | Active | 2019 |
| BURNETT COUNTY LAND CONSERVATION DEPARTMENT: Lucky Oats Farm, Feed Lot Runoff Control | TMD07000Y19 | Active | 2019 |
| CLARK COUNTY LAND CONSERVATION DEPT: Clark Co 2019 TRM: Putting the 'Clear Water' back in the Eau Claire RiverProject | TMD10000LY19 | Active | 2019 |
| DANE COUNTY: Flood Repair - German Valley Creek Middle | TMD13000Y19FA | Active | 2019 |
| DANE COUNTY: Flood Repair - Vermont Creek | TMD13000Y19FB | Active | 2019 |
| JUNEAU COUNTY: Whispering Winds Farm LLC | TMD29000Y20 | Complete | 2020 |
| SHAWANO COUNTY: Schmidt Ag Waste | TMD59000Y20 | Active | 2020 |
| WAUPACA COUNTY: Bear Lake - Lower Little Wolf River Watershed | TMD69000LY20 | Active | 2020 |
| WOOD COUNTY: Mill Creek Watershed 9 Key TMDL Project | TMD72000LY20 | Active | 2020 |
| COLUMBIA COUNTY: Dan and Bryan Guenther | TMD11000Y20 | Complete | 2020 |
| BURNETT COUNTY LAND CONSERVATION DEPARTMENT: Goetz/Mogren Erosion Control | TMD07000Y21 | Active | 2021 |
| RUSK COUNTY: Austin Giles Feedlot | TMD54000Y21 | Active | 2021 |
| LA CROSSE COUNTY: Bostwick Creek | TMD32000LY21 | Active | 2021 |
| COLUMBIA COUNTY: Oliver Leachate Project | TMD11000AY21 | Active | 2021 |
| COLUMBIA COUNTY: Rock Garden Farm LLC/Hahn | TMD11000Y21 | Active | 2021 |
| ST. CROIX COUNTY: South Fork Willow River TMDL TRM | TMD55000LY21 | Active | 2021 |
| WAUPACA COUNTY: Whitetail Valley Dairy - Manure Management | TMD68000Y21 | Active | 2021 |
| DANE COUNTY: Gilles, Eugene | TMD13000Y21 | Active | 2021 |
| FOND DU LAC COUNTY: Pipe Creek Streambank Restoration & Ancillary BMPs | TMD20000LY21 | Active | 2021 |
| MARATHON COUNTY: Matt Hartwig Manure Storage Project | TMD37000Y21 | Active | 2021 |
| SHAWANO COUNTY: Mastey Ag Waste Project | TMD58000AY21 | Active | 2021 |
| SHAWANO COUNTY: Shawland Ag Waste | TMD58000Y21 | Active | 2021 |
| VILLAGE OF LAC LA BELLE: Golf Course Stream Streambank Restoration | TMD67146Y21 | Active | 2021 |
| VILLAGE OF MOUNT PLEASANT: Lamparek Ditch - Ph. 3 - Stream Corridor Restoration | TMD51151Y21 | Active | 2021 |
| WAUPACA COUNTY: Weyauwega Lake - Waupaca River Watershed | TMD68000LY21 | Active | 2021 |
| DODGE COUNTY: Carl Reible | TMD14000Y21 | Active | 2021 |
| OUTAGAMIE COUNTY: Upper Duck Creek II TMDL Implementation | TMD44000LY21 | Proposed | 2021 |